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Merged
bartkrekelberg merged 11 commits into
mainfrom
intratrialartifact
Nov 5, 2026
Merged

bartkrekelberg merged 11 commits into
mainfrom
intratrialartifact

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🟡 Changes recommended

A critical rmoutliers argument-order error breaks finite-outlier averaging, while additional defects affect three-sample timing, NaN edge masking, and mixed artifact metadata handling.

4 open issues
What changed in this PR

Adds within-trial artifact masking to the MATLAB/DataJoint epoch pipeline, preserving trials while recording masked intervals. It also extends time-frequency analysis and fixes blob handling.

Changes:

  • Adds configurable artifact windows, padding, and masked-fraction reporting.
  • Adds Morlet CWT spectrograms, baseline normalization, NaN-gap handling, and matrix-aware averaging.
  • Preserves plugin payloads and multi-axis tuples, with expanded regression coverage.
FileDescription
tests/​TestUtilities.mUpdates the expected wavelet time axis to seconds.
tests/​TestPluginParameter.mTests blob shapes, cell payloads, and byte-stream decoding.
tests/​TestEpochArtifacts.mTests window masking, exclusions, and rejection compatibility.
tests/​TestDataJointEpoch.mTests stored artifact intervals and attrition summaries.
tests/​TestDataJointDeletePlan.mAdds deletion-plan pruning and count tests.
tests/​TestDataJointCounts.mTests bounded counts and display query counts.
tests/​TestCacheSpectrogram.mTests transforms, baselines, gaps, and grouped computations.
+prep/​epochArtifacts.mImplements epoch rejection or window-based NaN masking.
+ns/​Tepoch.mKeeps multiple axes inside a single stored tuple.
+ns/​PluginParameter.mPreserves individual blob payloads during table conversion.
+ns/​EpochParm.mAdds masking defaults, validation, and serialization.
+ns/​Epoch.mIntegrates masking, stores intervals, and reports masked fractions.
+ns/​cache.mAdds CWT analysis, baseline normalization, gap masking, and matrix averaging.

Review effort: Balanced

Comment thread+ns/cache.m Resolved
Comment thread+ns/Epoch.m Resolved
Comment thread+ns/cache.m Resolved
Comment thread+ns/cache.m Resolved
Co-authored-by: bartkrekelberg <[email protected]>

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🔵 Needs a closer look

The rmoutliers call places the dimension after name/value options, causing averaging with any finite outlier setting to fail instead of returning results.

2 open issues
1 previously missed issue

In code that hasn't changed since last review

Low severity Add DataJoint round-trip test for two-axis blobs

+ns/​Tepoch.m:75

The new two-axis blob wrapping is not exercised by the persistence tests: TestDataJointTepoch only stores single-axis FFT or averaged signals, while TestCacheSpectrogram stops at compute. Add an isolated DataJoint test that populates a wavelet or spectrogram Tepoch and verifies one row per dependent variable, both frequency/time axes round-trip in x, and the corresponding time-by-frequency signal shape. This is the cell-valued case that behaves differently from the existing numeric-axis tests.

2 resolved since last review

Review effort: Balanced

@bartkrekelberg
bartkrekelberg merged commit 4377df4 into mainNov 5, 2026
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@bartkrekelberg